PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC021590.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 149aa MW: 16885.5 Da PI: 8.6157

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC021590.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.1	7.6e-19	38	126	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +k ++ps+v+ +l lpkkf++ h +++++t+tledes++ +e+k+ + + + l++GW++F a++L+egD +vF+l++ ++f +v ++r EcC021590.10 38 VKHMLPSHVTGGFWLGLPKKFCDLHL--PQQDVTITLEDESSKGYEIKY--LGAKMG--LSGGWRGFSIAHNLQEGDALVFQLVKPTRF--KVIICR 126 58899***************8885..35899************..777755..9********************9986777..888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.2E-21	29	126	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.87E-24	30	126	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.24E-26	35	126	No hit	No description
PROSITE profile	PS50863	12.661	37	128	IPR003340	B3 DNA binding domain
SMART	SM01019	1.4E-18	37	128	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.5E-17	38	126	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
PKRERAADDE YGTASANDAL DRAKRIQSTL SPEYPVMVKH MLPSHVTGGF WLGLPKKFCD 60 LHLPQQDVTI TLEDESSKGY EIKYLGAKMG LSGGWRGFSI AHNLQEGDAL VFQLVKPTRF 120 KVIICRAFSI MYNISFFATP ECVRFCFYR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010068473.1	5e-84	PREDICTED: B3 domain-containing protein Os01g0234100
TrEMBL	A0A059BDN9	4e-83	A0A059BDN9_EUCGR; Uncharacterized protein
STRING	XP_010068473.1	2e-83	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-41	B3 family protein