PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC021760.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 152aa    MW: 16969.7 Da    PI: 10.4302
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC021760.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.12.1e-1036125294
                   EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                   f+v ++s++l ++++++p   ++eh +g    s++ t    ++ sW vkl    + g   l++GW  F +   LkegD+++Fkl++ ++ el+v
  EcC021760.30  36 FTVVIRSHNLLKQNVTVPGGILREHiNG----SMQTTTLKYTNGSWPVKLLCYPQHGLGNLSAGWALFHRGTSLKEGDVCLFKLVRIDNIELKV 125
                   56788999999999***********532....333444445668******665555556799*********************98766665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-1230126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-1231125IPR015300DNA-binding pseudobarrel domain
CDDcd100177.01E-1034126No hitNo description
PROSITE profilePS508639.13635129IPR003340B3 DNA binding domain
PfamPF023621.3E-836123IPR003340B3 DNA binding domain
SMARTSM010190.00536129IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009231Biological Processriboflavin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activity
GO:0008686Molecular Function3,4-dihydroxy-2-butanone-4-phosphate synthase activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
VSPAMLASRS STSKRSKTVT TALKGANKDE LQCPSFTVVI RSHNLLKQNV TVPGGILREH  60
INGSMQTTTL KYTNGSWPVK LLCYPQHGLG NLSAGWALFH RGTSLKEGDV CLFKLVRIDN  120
IELKVSNSEG MSRFRCKLWY TYRKIYASLC FV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724504.15e-68PREDICTED: B3 domain-containing protein REM19-like
TrEMBLA0A059D7B11e-66A0A059D7B1_EUCGR; Uncharacterized protein
STRINGXP_010046516.14e-46(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-11B3 family protein