PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC021915.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family DBB
Protein Properties Length: 157aa    MW: 17512.7 Da    PI: 7.0694
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC021915.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.22.2e-05234335
      zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                  e++C+ +   +  ++C+ +   lC +C  + H+
  EcC021915.10  2 EKVCEFCRALRPVIYCQADAAQLCLSCDAKVHS 34
                  679******99*****************99995 PP
2zf-B_box16.22.3e-054786541
      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg...Htvvp 41
                   C+ ++  ++  +C d + ++C++C   +H g   H+++ 
  EcC021915.10 47 LCDSCQYRPAYVHCLDHKLYICRNCDRRIHDGscqHRTQA 86
                  7*****************************8799999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.2E-6147IPR000315B-box-type zinc finger
PROSITE profilePS501198.987147IPR000315B-box-type zinc finger
CDDcd000210.00121435No hitNo description
PROSITE profilePS501198.8874387IPR000315B-box-type zinc finger
CDDcd000210.0014776No hitNo description
SMARTSM003360.154887IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MEKVCEFCRA LRPVIYCQAD AAQLCLSCDA KVHSANALSS RHLRSLLCDS CQYRPAYVHC  60
LDHKLYICRN CDRRIHDGSC QHRTQAIYSY MGSPSANDFA ELWDLDLSQL GNLACTGPSD  120
SSSHEFVDLG TITVDTSGSV YPGECNVGSR NREKKLR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724530.11e-109PREDICTED: putative zinc finger protein At1g68190 isoform X2
SwissprotQ9C9F44e-37COLX_ARATH; Putative zinc finger protein At1g68190
TrEMBLA0A059D6D51e-108A0A059D6D5_EUCGR; Uncharacterized protein
STRINGXP_010044125.11e-109(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM832022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-30B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]