PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC022004.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 233aa MW: 26993.9 Da PI: 9.4763

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC022004.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.8	8.5e-57	35	160	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeel+++yL++kv + ++++ +++ evd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+ + + EcC022004.10 35 LPPGFRFHPTDEELITHYLTPKVLDGSFRA-RAMGEVDLNKCEPWDLPGQAKMGEKEWYFFCVRDRKYPTGMRTNRATEAGYWKATGKDKEIRR-MK 129 79*************************9.89***********999999***********************************9.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kktLvfy+grap+g+kt+Wvmhe+rl EcC022004.10 130 KVVGMKKTLVFYRGRAPNGQKTNWVMHEFRL 160 99*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-65	26	185	IPR003441	NAC domain
PROSITE profile	PS51005	59.747	35	185	IPR003441	NAC domain
Pfam	PF02365	3.6E-30	36	160	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MDRIGREVQP KKQLACFYVK SSTTMIFEGD EQMELPPGFR FHPTDEELIT HYLTPKVLDG 60 SFRARAMGEV DLNKCEPWDL PGQAKMGEKE WYFFCVRDRK YPTGMRTNRA TEAGYWKATG 120 KDKEIRRMKK VVGMKKTLVF YRGRAPNGQK TNWVMHEFRL GDGYYQHHLS NSQKNDWVIC 180 RIFEKRPDGK KADQPETLPG GLERLSSFDN EPKASLLPLP PLVESSPFTT TSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	32	191	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	32	191	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	32	191	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	32	191	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	32	191	17	174	NAC domain-containing protein 19
3swm_B	1e-55	32	191	17	174	NAC domain-containing protein 19
3swm_C	1e-55	32	191	17	174	NAC domain-containing protein 19
3swm_D	1e-55	32	191	17	174	NAC domain-containing protein 19
3swp_A	1e-55	32	191	17	174	NAC domain-containing protein 19
3swp_B	1e-55	32	191	17	174	NAC domain-containing protein 19
3swp_C	1e-55	32	191	17	174	NAC domain-containing protein 19
3swp_D	1e-55	32	191	17	174	NAC domain-containing protein 19
4dul_A	1e-55	32	191	14	171	NAC domain-containing protein 19
4dul_B	1e-55	32	191	14	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010029310.1	1e-157	PREDICTED: NAC domain-containing protein 79
Swissprot	Q9FLJ2	5e-94	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A059AQT6	1e-156	A0A059AQT6_EUCGR; Uncharacterized protein
STRING	XP_010029310.1	1e-157	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	2e-93	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]