PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC022022.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 205aa MW: 19779 Da PI: 8.3686

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC022022.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	62.9	5.7e-20	1	34	29	62
zf-Dof 29 PryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 Pr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s EcC022022.10 1 PRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRS 34 9*****************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-12	1	32	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-15	1	32	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	17.644	1	32	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
PRHFCKSCRR YWTHGGTLRD IPVGGGSRKN AKRSRTGASA SSSSSSAAVV LPGVAPQDHH 60 LHAASLLLPF AGSHGGPVHL AGGDGDGKPG LNVCGSFTSL LNAHGPPGFL ALGGFGLGLG 120 PGGLDEMAFG LGRGVWPFQG VGDGVAAGVG SNGGPAGIGN AWQFEGGDEG GLVGGGGGGG 180 GGGGGGDSCF SWPGLAISTA WSGLK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018715572.1	1e-91	PREDICTED: dof zinc finger protein DOF3.4-like
TrEMBL	A0A059B0U6	1e-90	A0A059B0U6_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010026408.1	2e-91	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-26	OBF binding protein 1