PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC022275.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 115aa    MW: 13062.9 Da    PI: 10.2467
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC022275.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.6e-17135135
          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                  C +C + kTp+WR gp g+ktLCnaCG+++++ +l
  EcC022275.10  1 CLHCASEKTPQWRTGPMGPKTLCNACGVRFKSGRL 35
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003202.4E-15135IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-14159No hitNo description
SMARTSM004019.5E-12145IPR000679Zinc finger, GATA-type
CDDcd002025.51E-12147No hitNo description
Gene3DG3DSA:3.30.50.102.5E-13133IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440126IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.358131IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006886Biological Processintracellular protein transport
GO:0055085Biological Processtransmembrane transport
GO:0031965Cellular Componentnuclear membrane
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
CLHCASEKTP QWRTGPMGPK TLCNACGVRF KSGRLVPEYR PAASPTFVSA KHSNSHRKVL  60
ELRRQKELHR PHHHHHHHHQ PQQYFGQSPM FGMSAGGADE FLINHCGGPA YRHMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033845.12e-62PREDICTED: GATA transcription factor 12
SwissprotP697812e-46GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A059AJU14e-61A0A059AJU1_EUCGR; GATA transcription factor
STRINGXP_010033845.17e-62(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-48GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]