PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC022742.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 172aa    MW: 18481.7 Da    PI: 10.0719
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC022742.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-192171256
           AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                  ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a+++l+g+
  EcC022742.30 21 KFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAAQAYDEAARALRGA 71
                  899******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-352184IPR001471AP2/ERF domain
PfamPF008472.9E-132170IPR001471AP2/ERF domain
CDDcd000188.32E-312178No hitNo description
PROSITE profilePS5103220.2572178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-292178IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-202178IPR016177DNA-binding domain
PRINTSPR003677.8E-82233IPR001471AP2/ERF domain
PRINTSPR003677.8E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006342Biological Processchromatin silencing
GO:0030422Biological Processproduction of siRNA involved in RNA interference
GO:0080188Biological ProcessRNA-directed DNA methylation
GO:0005654Cellular Componentnucleoplasm
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MGMPEGSLRG RKKSSSRGHH KFVGVRQRPS GRWVAEIKDS LQKVRLWLGT FDTAEDAAQA  60
YDEAARALRG ANARTNFELP KSELNSSGGN GSGGSCITDN LVPFSFDEMC GNANEAEGLV  120
DALKARLFDG KSRNMLPPLS NWPAQPKVMV NSSCRTSTDK PRVSSAPTAP AS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1519771271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032135.11e-120PREDICTED: dehydration-responsive element-binding protein 2F
TrEMBLA0A059ADT12e-84A0A059ADT1_EUCGR; Uncharacterized protein
STRINGXP_010032135.11e-119(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-19related to AP2 11