PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC023234.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 225aa    MW: 25620.2 Da    PI: 6.9157
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC023234.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.35e-0789133554
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   h   Er RR++ + +++ L + lP+      +K++K +i++ A+  Ik+L
  EcC023234.30  89 HMLSERMRREKQKRSYSALLSELPHG-----TKNDKNSIVQTACMRIKEL 133
                   6678*********************7.....79**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-1181148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.24984133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.65E-588133No hitNo description
Gene3DG3DSA:4.10.280.103.5E-789151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000373Biological ProcessGroup II intron splicing
GO:0048316Biological Processseed development
GO:0009507Cellular Componentchloroplast
GO:0003723Molecular FunctionRNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDLFFHEEVQ SDIFWCDQLV EPPPPPLLPL PPANPSAFSP YTNRLPSQDR GFMPNPGNNM  60
NKRVMEFLRR SWAEPSQIQE FDRERGFRHM LSERMRREKQ KRSYSALLSE LPHGTKNDKN  120
SIVQTACMRI KELVKYKQEL ERQNGELKSG LNEKSGGDKA EGTKIRVKIA NPTSGIDSML  180
EVLKCLDNMG LKATAIQTQC SADQLFAVIE VENEVCAQQS DANVH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194101MRREKQKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069157.11e-157PREDICTED: transcription factor bHLH92
TrEMBLA0A059AUU21e-156A0A059AUU2_EUCGR; Uncharacterized protein
STRINGXP_010069157.11e-157(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.12e-35bHLH family protein