PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC023354.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 89aa    MW: 10405.8 Da    PI: 5.1372
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC023354.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.5e-0714551454
                  HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
           HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  d+i + +++L+ +lP+   + +++K+  +e+L++++ YI+sL
  EcC023354.10 14 DEIHDLIFKLQAMLPQlEQRRNDGKVAPSEVLKETCSYIRSL 55
                  67999***********888*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-71473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-71470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-51455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000724Biological Processdouble-strand break repair via homologous recombination
GO:0006334Biological Processnucleosome assembly
GO:0008283Biological Processcell proliferation
GO:0010311Biological Processlateral root formation
GO:0016444Biological Processsomatic cell DNA recombination
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003682Molecular Functionchromatin binding
GO:0042393Molecular Functionhistone binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSTRRSRTSQ FTDDEIHDLI FKLQAMLPQL EQRRNDGKVA PSEVLKETCS YIRSLHREMD  60
ELSERLTTLL DNMEISSVDA QLLRNVLLQ
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020586720.18e-26transcription factor ILI3-like
SwissprotQ9LJX16e-23PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A059A6572e-57A0A059A657_EUCGR; Uncharacterized protein
STRINGEOY217916e-25(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.13e-25bHLH family protein