PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC023451.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 180aa    MW: 21058.3 Da    PI: 9.9142
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC023451.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.48.9e-15853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
     EcC023451.10  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding32.42.1e-1060103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k++++  W+tIa  +   Rt+ qc +r+ k+l
     EcC023451.10  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVV--RTPSQCLERYEKLL 103
                      68*****************99.********9..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-19556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139213.6E-141070No hitNo description
CDDcd001671.32E-111053No hitNo description
SuperFamilySSF466891.2E-2033107IPR009057Homeodomain-like
CDDcd116599.00E-3055106No hitNo description
Gene3DG3DSA:1.10.10.605.5E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129414.79958107IPR017930Myb domain
SMARTSM007171.3E-1158105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVVR TPSQCLERYE KLLDAACAKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L2e-9721803181Cell division cycle 5-like protein
5xjc_L2e-9721803181Cell division cycle 5-like protein
5yzg_L2e-9721803181Cell division cycle 5-like protein
5z56_L2e-9721803181Cell division cycle 5-like protein
5z57_L2e-9721803181Cell division cycle 5-like protein
5z58_L2e-9721803181Cell division cycle 5-like protein
6ff4_L2e-9721803181Cell division cycle 5-like protein
6ff7_L2e-9721803181Cell division cycle 5-like protein
6icz_L2e-9721803181Cell division cycle 5-like protein
6id0_L2e-9721803181Cell division cycle 5-like protein
6id1_L2e-9721803181Cell division cycle 5-like protein
6qdv_O2e-9721803181Cell division cycle 5-like protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039520.11e-122PREDICTED: cell division cycle 5-like protein isoform X2
RefseqXP_015875524.11e-124cell division cycle 5-like protein
RefseqXP_015875562.11e-123cell division cycle 5-like protein
RefseqXP_017258014.11e-122PREDICTED: cell division cycle 5-like protein
SwissprotP929481e-112CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A067DSG91e-125A0A067DSG9_CITSI; Uncharacterized protein
TrEMBLA0A2H5Q0091e-123A0A2H5Q009_CITUN; Uncharacterized protein
STRINGevm.model.supercontig_306.11e-124(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16532913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-109cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]