PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC024712.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family RAV
Protein Properties Length: 352aa    MW: 38636.7 Da    PI: 9.8455
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC024712.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.24.9e-1464112155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+ykGV   + +grW A+I++      ++r++lg+f  +e+Aa+a++ a+++++g
  EcC024712.20  64 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEDAARAYDIAAQRFRG 112
                   89****9888.8*********3.....5*************************98 PP
2B398.44.6e-31190289194
                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   f+k+ tpsdv+k++rlv+pk++ae+h         + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v F+++   +++
  EcC024712.20 190 FEKAVTPSDVGKLNRLVIPKQHAEKHfplpggPAATMKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDTVCFQRSTGPDKQ 286
                   89***************************96633445899*************************************************87656665 PP

                   .EE CS
            B3  92 lvv 94 
                   l++
  EcC024712.20 287 LYI 289
                   655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-2464122No hitNo description
SuperFamilySSF541719.81E-1864120IPR016177DNA-binding domain
PfamPF008471.3E-864112IPR001471AP2/ERF domain
SMARTSM003807.5E-2965126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-2165120IPR001471AP2/ERF domain
PROSITE profilePS5103220.48165120IPR001471AP2/ERF domain
PRINTSPR003677.8E-56677IPR001471AP2/ERF domain
PRINTSPR003677.8E-586102IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.6E-39183300IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-28189280No hitNo description
SuperFamilySSF1019363.53E-30189289IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.142190294IPR003340B3 DNA binding domain
PfamPF023627.3E-28190289IPR003340B3 DNA binding domain
SMARTSM010192.5E-25190295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004177Molecular Functionaminopeptidase activity
GO:0008235Molecular Functionmetalloexopeptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDGISCTDES TTSSDSPSFS PPPAKPSPPP PGSLWRVGSG ASAVLDPAAD GGAEAESHKK  60
LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEEDAA RAYDIAAQRF RGRDAVTNFK  120
PDGAMDPAEA DFLAKHSKPE IVDMLRKHTY RDELEQSKRS YRGSAAERAG RGGFGPGRTE  180
WSAAAREQLF EKAVTPSDVG KLNRLVIPKQ HAEKHFPLPG GPAATMKGVL LNFEDVGGKV  240
WRFRYSYWNS SQSYVLTKGW SRFVKEKSLK AGDTVCFQRS TGPDKQLYID FKPRGQPPAG  300
PAAPPPPPVQ MVRLFGVNIM EVPYCGGGKR MRDVDLLSFE CRKKQQMVVG AL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5618730411127DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018823697.11e-164PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-141RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A2I4EWD91e-162A0A2I4EWD9_JUGRE; AP2/ERF and B3 domain-containing transcription factor RAV1-like
STRINGcassava4.1_010157m1e-161(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-134related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]