PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC024862.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

HD-ZIP

Protein Properties

Length: 220aa MW: 24949.1 Da PI: 4.9897

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC024862.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.5	1.5e-20	59	112	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+eq+e Le+ F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k EcC024862.20 59 GKRKLTAEQVELLEQNFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWK 112 56799************************************************9 PP
2	HD-ZIP_I/II	118	5.3e-38	60	150	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kr+l++eqv+lLE++F e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ +++++ e++r+e+ev +L+e+l++ EcC024862.20 60 KRKLTAEQVELLEQNFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKSKKLEVEYAKLKSVHETVVVEKCRFESEVLKLKEQLSK 150 9***************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.8E-18	51	115	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.313	54	114	IPR001356	Homeobox domain
SMART	SM00389	2.5E-19	57	118	IPR001356	Homeobox domain
Pfam	PF00046	8.2E-18	59	112	IPR001356	Homeobox domain
CDD	cd00086	6.91E-17	60	115	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.8E-21	61	119	IPR009057	Homeodomain-like
PRINTS	PR00031	9.5E-6	85	94	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	89	112	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.5E-6	94	110	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MNDLSEDDMA LISELYPGVY MRPSPPPQEA KPPRRRRKKG RGLENPGEEG GGTGGEGRGK 60 RKLTAEQVEL LEQNFGDEHK LESERKDRLA AELGLDPRQV AVWFQNRRAR WKSKKLEVEY 120 AKLKSVHETV VVEKCRFESE VLKLKEQLSK AEMEIKRLSE KADLGLSGNS PCSSVTADAA 180 TDDPVWGDFG VAVECDDQDV LYYMPQNAYL QGLEWYNQYV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010070037.1	1e-159	PREDICTED: homeobox-leucine zipper protein ATHB-40
Swissprot	O23208	2e-70	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A059AXW8	1e-128	A0A059AXW8_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010070037.1	1e-158	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	2e-62	homeobox protein 40

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]