PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC025474.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 248aa    MW: 27183.2 Da    PI: 7.334
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC025474.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.2e-142365246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g +T++Ed ++ ++ ++ G++ W+ Ia+ ++ gRt++++k++w++
     EcC025474.20 23 GGFTEDEDNIICNLYNEIGSR-WSVIASQLP-GRTDNDVKNYWNT 65
                     569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-11228IPR009057Homeodomain-like
SuperFamilySSF466893.59E-22371IPR009057Homeodomain-like
PROSITE profilePS5129420.4691771IPR017930Myb domain
SMARTSM007171.0E-122169IPR001005SANT/Myb domain
PfamPF002491.5E-122365IPR001005SANT/Myb domain
CDDcd001672.77E-102567No hitNo description
Gene3DG3DSA:1.10.10.605.6E-192968IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0006412Biological Processtranslation
GO:0015074Biological ProcessDNA integration
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0008270Molecular Functionzinc ion binding
GO:0008408Molecular Function3'-5' exonuclease activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
LRRCGKSCRL RWLNYLRPDI KHGGFTEDED NIICNLYNEI GSRWSVIASQ LPGRTDNDVK  60
NYWNTKLKKK RLAGKVNGAN NSSYNTMSTS NAPALLGFAS NHPSGSPNLD MYHRGFSVSG  120
INTFMAAECQ VIYDRATTAN VPNSAYYPYT GFDHIKSNEI EASSKVSTSS ISNSSSISSS  180
SSSLAMDGKP SLLTCDKGTL DEAAAMMDFG FGFPFDAVNN GIWFQERAQD NSLNCGSYIS  240
SSDLNYIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-2037040107B-MYB
1h8a_C1e-1937060127MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047308.10.0PREDICTED: transcription factor RAX2
TrEMBLA0A059CLD00.0A0A059CLD0_EUCGR; Uncharacterized protein
STRINGXP_010047308.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.16e-42myb domain protein 68