PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC025723.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

HB-other

Protein Properties

Length: 333aa MW: 37860 Da PI: 9.3632

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC025723.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.4	7.7e-11	108	153	8	53
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L ++F++n ps+ +e LAk+ gL+ ++V+ WF+N R+ EcC025723.30 108 PPTAVEKLRQVFAENELPSRCVKENLAKEFGLEPEKVSKWFKNARY 153 567899**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-13	88	152	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.59E-11	98	158	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.633	98	158	IPR001356	Homeobox domain
SMART	SM00389	9.2E-9	100	162	IPR001356	Homeobox domain
CDD	cd00086	6.82E-8	101	153	No hit	No description
Pfam	PF00046	2.1E-8	108	153	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006366	Biological Process	transcription from RNA polymerase II promoter
GO:0009733	Biological Process	response to auxin
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
PESIAGSDVL MDTDTDTVCG PRQRNAVDYK QLYNEMFGKD TPACEQASED EDWGPNKRRR 60 RERETDAAST LMTLCESEKN NPFIDQASEG DKKLSAEARM RRRIFRIPPT AVEKLRQVFA 120 ENELPSRCVK ENLAKEFGLE PEKVSKWFKN ARYMALKTRK AGGADQPPKS PQKHKESELA 180 KMMKGAAPIL SKDASTDIEF LSSLNSEKVI QQKSTKPIHG KGSPTVPEHS YMNSGMTLLC 240 QENFEFDDNM SLKQIKLLKG KPKDRKRVDF AASEGLRERE AQLRELCKIR SRLDSLRKRT 300 LTFQSSESKA SDEFNTCRSR VVYVPVAEIK ERA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010046935.1	1e-157	PREDICTED: uncharacterized protein LOC104435928 isoform X1
TrEMBL	A0A059CJM3	1e-156	A0A059CJM3_EUCGR; Uncharacterized protein
STRING	XP_010046935.1	1e-156	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8699	27	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	2e-56	pathogenesis related homeodomain protein A