PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC025730.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 137aa MW: 15694.8 Da PI: 9.8861

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC025730.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	74.7	2.2e-23	5	79	54	127
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 e+ew+fFs+r+ ky +g+r+nr+++ gyWkatg dk++ls+ +++ g+kk+L+ y+gr pk +kt+W+mhe r EcC025730.10 5 AEEEWFFFSPRNWKYLNGTRPNRTAALGYWKATGGDKPILSSsGSRCLGVKKVLTSYRGRPPKEVKTNWTMHEDR 79 478***********************************9867777***********************955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	30.633	1	103	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-27	4	90	IPR003441	NAC domain
Pfam	PF02365	3.5E-9	8	77	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
KAVFAEEEWF FFSPRNWKYL NGTRPNRTAA LGYWKATGGD KPILSSSGSR CLGVKKVLTS 60 YRGRPPKEVK TNWTMHEDRL LDHNRHYSHQ LGGPLLVSFL FSSSESEIGS INHGNYESRF 120 CHSIWIRACI LYNLPSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-28	1	86	65	148	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-28	1	86	65	148	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-28	1	86	65	148	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-28	1	86	65	148	NO APICAL MERISTEM PROTEIN
3swm_A	3e-28	1	86	68	151	NAC domain-containing protein 19
3swm_B	3e-28	1	86	68	151	NAC domain-containing protein 19
3swm_C	3e-28	1	86	68	151	NAC domain-containing protein 19
3swm_D	3e-28	1	86	68	151	NAC domain-containing protein 19
3swp_A	3e-28	1	86	68	151	NAC domain-containing protein 19
3swp_B	3e-28	1	86	68	151	NAC domain-containing protein 19
3swp_C	3e-28	1	86	68	151	NAC domain-containing protein 19
3swp_D	3e-28	1	86	68	151	NAC domain-containing protein 19
4dul_A	3e-28	1	86	65	148	NAC domain-containing protein 19
4dul_B	3e-28	1	86	65	148	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021637435.1	5e-38	NAC transcription factor 29-like
Swissprot	Q8H4S4	3e-31	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A218Y3Q2	5e-39	A0A218Y3Q2_PUNGR; Uncharacterized protein
STRING	POPTR_0011s05760.1	4e-35	(Populus trichocarpa)
STRING	cassava4.1_027253m	4e-35	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	5e-33	NAC domain containing protein 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]