PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC026137.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 130aa    MW: 15014.4 Da    PI: 9.1696
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC026137.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.7e-1319108379
                   EE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-E CS
            B3   3 kvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltled.esgrsWevkliyrkksgryvltkGW.keFvkangLkegDf 79 
                   k+lt sd + ++rl lp  ++++h           + k+ee++ ++ +d  +gr+ ++ ++ +k+ g+yvl +GW keFv++++Lk+gD 
  EcC026137.10  19 KKLTESDLSPLSRLLLPGGCLQTHvfpqmdekmlrQVKSEEGMPVVGKDvATGREHQFVFRCWKSTGSYVLNGGWtKEFVEEKRLKVGDE 108
                   99***********************9977666666555556666776666666888888888*************668***********4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-1714125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-1717119IPR015300DNA-binding pseudobarrel domain
PfamPF023629.4E-1019109IPR003340B3 DNA binding domain
CDDcd100171.15E-1071125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
RVDVSTDLAL YEDPWKIRKK LTESDLSPLS RLLLPGGCLQ THVFPQMDEK MLRQVKSEEG  60
MPVVGKDVAT GREHQFVFRC WKSTGSYVLN GGWTKEFVEE KRLKVGDEIG MVWFMSSRMF  120
YFKVLHRAAA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058732.13e-74PREDICTED: gibberellin 2-beta-dioxygenase 8
RefseqXP_010058735.14e-76PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLA0A059C5135e-77A0A059C513_EUCGR; Uncharacterized protein
STRINGXP_010058732.11e-73(Eucalyptus grandis)
STRINGXP_010058735.11e-75(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.12e-15B3 family protein