PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC026270.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 197aa    MW: 22255.5 Da    PI: 8.8392
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC026270.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.73.4e-3451382128
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrk.nratksgyWkatgkdke 91 
                   p+G+rF+Pt++el++++L+ k++gk       i+e+ iy++eP dL         + ++ +e++fF++   k ++++r+ nr+t+ gyWk t k++ 
  EcC026270.40   5 PVGLRFEPTEDELIDHHLRGKLKGKLEAY-CLIPELYIYSCEPPDLFIsynelsDIPSDGRECFFFCPCGDKIPSNHRSnNRMTELGYWKDTCKKRV 100
                   89*********************998555.67**************633455555666899***********9987776156************999 PP

           NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   + s  +g+++g++k+Lv+y+gr+pkg+ktd vmhey l
  EcC026270.40 101 IRSLvTGKQIGIRKILVYYEGRQPKGRKTDVVMHEYLL 138
                   98878999****************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-352159IPR003441NAC domain
PROSITE profilePS5100534.3424161IPR003441NAC domain
PfamPF023657.1E-195137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MASWPVGLRF EPTEDELIDH HLRGKLKGKL EAYCLIPELY IYSCEPPDLF ISYNELSDIP  60
SDGRECFFFC PCGDKIPSNH RSNNRMTELG YWKDTCKKRV IRSLVTGKQI GIRKILVYYE  120
GRQPKGRKTD VVMHEYLLNS SVSDSKISGP MAFVLCHIID RKRKKVRSAK ASTLANSSTG  180
SIPNDSGNGQ AHEISAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-22516216169Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160164RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065768.11e-145PREDICTED: protein NTM1-like 9
TrEMBLA0A058ZS051e-144A0A058ZS05_EUCGR; Uncharacterized protein
TrEMBLA0A059BB561e-143A0A059BB56_EUCGR; Uncharacterized protein
STRINGXP_010065768.11e-144(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.15e-36NAC 014