PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC026270.70
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 167aa    MW: 19654.9 Da    PI: 9.5
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC026270.70genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.57.5e-38101391128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka......eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                   lp G+rFhPtdeelv++yLk kv g++ ++  +i+evdi+k+ePw++pk    k  +      + +ew+fF+++        r +r+t  g+Wk+tg
  EcC026270.70  10 LPIGYRFHPTDEELVDHYLKLKVLGSRGNI-CIIPEVDICKWEPWEFPKifeeK--SivppddKVQEWWFFCPQTP------RIQRSTPLGFWKKTG 97 
                   699************************998.77***************745551..1455544666******9866......7899*********** PP

           NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    d+++++  +++++g+kktLvf++g+ ++g  t+Wv+hey+l
  EcC026270.70  98 IDRTIKAGdRNREIGTKKTLVFHRGHGKRGIGTKWVIHEYHL 139
                   ******9867788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.06E-395146IPR003441NAC domain
PROSITE profilePS5100540.33810158IPR003441NAC domain
PfamPF023651.6E-2311139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MAAAIIPKNL PIGYRFHPTD EELVDHYLKL KVLGSRGNIC IIPEVDICKW EPWEFPKIFE  60
EKSIVPPDDK VQEWWFFCPQ TPRIQRSTPL GFWKKTGIDR TIKAGDRNRE IGTKKTLVFH  120
RGHGKRGIGT KWVIHEYHLL TNNLNELFPR AVCNLSLVYF FWFTTFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-30913914140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018733119.11e-120PREDICTED: protein NTM1-like 9
SwissprotB5X5701e-41NAC14_ARATH; NAC domain-containing protein 14
TrEMBLA0A059BC561e-106A0A059BC56_EUCGR; Uncharacterized protein
STRINGXP_010066077.16e-93(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.25e-44NAC 014