PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC026489.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

SRS

Protein Properties

Length: 138aa MW: 14205.6 Da PI: 4.4455

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC026489.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	77.3	4.2e-24	6	57	104	154
DUF702 104 slPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 +lP++vss+avf+cv+vssvdd +e++aYqtav+igGhvf+GiLyd+G+++ EcC026489.10 6 NLPADVSSPAVFQCVKVSSVDDnPHEQFAYQTAVNIGGHVFRGILYDHGPDH 57 69******************56788*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.3E-21	6	56	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	1.0E-25	7	55	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
LELVGNLPAD VSSPAVFQCV KVSSVDDNPH EQFAYQTAVN IGGHVFRGIL YDHGPDHPTY 60 TNVAAGDDSP GGSSGGNELV QPLDLIAAAA TAAASPVANT ASVHVSSAAT PFFDPSSLYP 120 PPLSAYMAGT QFFPHPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010029723.1	5e-76	PREDICTED: protein SHI RELATED SEQUENCE 1
Swissprot	Q9SD40	1e-29	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A059ASL2	1e-74	A0A059ASL2_EUCGR; Uncharacterized protein
STRING	XP_010029723.1	2e-75	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3419	28	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	3e-20	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]