PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC026522.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 305aa    MW: 34808.5 Da    PI: 8.6978
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC026522.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.98.2e-164188245
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE....E-TTSE CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii....fsstgk 45
                   i+n++ r +tf kR++g++KKA E  +LC+++ +vii    +ss+g 
  EcC026522.10 41 LISNSRSRRITFEKRKKGLMKKAGEFKTLCGVDTCVIInpigISSDGL 88
                  59***********************************95555677773 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.7873278IPR002100Transcription factor, MADS-box
SMARTSM004328.3E-163296IPR002100Transcription factor, MADS-box
CDDcd002664.15E-1933108No hitNo description
SuperFamilySSF554554.97E-1933129IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-83454IPR002100Transcription factor, MADS-box
PfamPF003199.6E-164278IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-85469IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAIIQDSRRK RSSWLSRIHT FEEEILSIQI NMGRAKLKLE LISNSRSRRI TFEKRKKGLM  60
KKAGEFKTLC GVDTCVIINP IGISSDGLVK METWPPDRKE VERIVRRYQS EATDRRARHA  120
TGLHEFFASR KKKIDAELAK AHRANWEAKY PVSEEIFKDL SDPQLRSLLS AVDDRLEQAK  180
TRLATMKEKR RIEKAAPSDC TIPSDGVDLH ASNAGFMQDG VVEAGLPFDF LYQPDSSVGS  240
NHDYLSPLIS LPPEDSTQFG PSREDYSWCS TVNEAQSMIC DPRSNFYHQI VHRGQAQFFN  300
DPTYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14556RSRRITFEKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064825.20.0PREDICTED: uncharacterized protein LOC104451981
TrEMBLA0A059BT661e-152A0A059BT66_EUCGR; Uncharacterized protein
STRINGXP_010064825.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.14e-20AGAMOUS-like 82