PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC026609.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WOX
Protein Properties Length: 209aa    MW: 23618.6 Da    PI: 9.289
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC026609.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.11.1e-1155942257
                  SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox 22 nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  n +ps+++++e++++l    +++e++V++WFqN Ra+ k+
  EcC026609.10 55 NGTPSRQKIKEITTELsqhgQISETNVYNWFQNWRARSKR 94
                  679***********************************97 PP
2Wus_type_Homeobox63.15.9e-2152952164
  Wus_type_Homeobox 21 ksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       k+G  tP++++i++it+eL+++G+i+++NV++WFQN +aR+++k
       EcC026609.10 52 KAGNGTPSRQKIKEITTELSQHGQISETNVYNWFQNWRARSKRK 95
                       689****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.5E-42699IPR001356Homeobox domain
PfamPF000462.9E-95594IPR001356Homeobox domain
SuperFamilySSF466898.13E-105598IPR009057Homeodomain-like
CDDcd000865.24E-75596No hitNo description
Gene3DG3DSA:1.10.10.607.6E-85799IPR009057Homeodomain-like
PROSITE profilePS5007110.2845895IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MARELWVPIM DKIGKYLGIP SDWGGSKKQM FAWILGRISS KLESWKDKLL SKAGNGTPSR  60
QKIKEITTEL SQHGQISETN VYNWFQNWRA RSKRKMQNAT GNNTESEAEA GVESPKEMKT  120
KPEIFQSQQN PVSRNEDLCF HSPEISSDLH FADSQTKVES MVYSDGSLRS RNRNLGQLSF  180
YDAMLPNPGN EHMGGKMEVP GAYGLYHSA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041904.24e-99PREDICTED: WUSCHEL-related homeobox 8-like
SwissprotQ5QMM33e-32WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A059ARN93e-95A0A059ARN9_EUCGR; Uncharacterized protein
TrEMBLA0A076FSX53e-95A0A076FSX5_EUCGR; WOX13.2 protein
STRINGXP_010029579.19e-94(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.13e-29WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]