PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC026849.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HB-other
Protein Properties Length: 60aa    MW: 7127.21 Da    PI: 12.2801
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC026849.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.92.6e-064283054
                  HHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox 30 reeLAkklgLterqVkvWFqNrRak 54
                  +++L +++gL+ +q+ +WF NrR +
  EcC026849.30  4 KAKLVQETGLQLKQINNWFINRRKR 28
                  578999*****************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.799132IPR001356Homeobox domain
PfamPF059203.2E-10328IPR008422Homeobox KN domain
CDDcd000864.30E-6333No hitNo description
SuperFamilySSF466891.55E-8336IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-13334IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
GVDKAKLVQE TGLQLKQINN WFINRRKRNW HSNPSSSSIS KSKRKRSLKI DFASFMRNFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12545RKRNWHSNPSSSSISKSKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102677.11e-20homeobox protein knotted-1-like 13 isoform X2
SwissprotO041364e-20KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A2K3KZ252e-19A0A2K3KZ25_TRIPR; Homeobox protein knotted-1-like 3-like (Fragment)
STRINGXP_010047185.14e-20(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.18e-17KNOTTED1-like homeobox gene 4