PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC026959.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

HB-other

Protein Properties

Length: 199aa MW: 22663.9 Da PI: 7.2351

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC026959.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.3	4.7e-07	1	19	39	57
S-HHHHHHHHHHHHHHHHC CS Homeobox 39 LterqVkvWFqNrRakekk 57 ++ ++V++WFqN++a++++ EcC026959.10 1 IEGKNVFYWFQNHKARQRQ 19 6889*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00046	1.4E-4	1	19	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
IEGKNVFYWF QNHKARQRQK EKQESLAYLN RYFHKSARTA FHPPCPNAVC GPYFVPQSDI 60 GTMYPQCPKV LLPCGIKRRQ RTDFVERTKT FCRTDFAYPA HPQGHHHDVT FHQTAESNND 120 STVERNQQTL DLFPLHPTGR AVQDTSKCSQ ADHDCSRADQ DCSATTSTSS SSEARDGGDN 180 GDQPFFDFFS ANGCFCERD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043567.1	1e-139	PREDICTED: WUSCHEL-related homeobox 2
TrEMBL	A0A059D525	1e-138	A0A059D525_EUCGR; Uncharacterized protein
STRING	XP_010043567.1	1e-139	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6914	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59340.1	3e-25	WUSCHEL related homeobox 2