PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC027143.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 164aa MW: 18902.7 Da PI: 9.1161

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC027143.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.4	6.2e-10	59	134	2	83
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 fYn+ Akev F++r++++k++ ++e ++Cs++g++ e++ ++r+ + +C +++v++ + +kw+++k+++ EcC027143.20 59 FYNNCAKEVRFEIRVNSHKRK-GSKEKCGVVLCCSCQGYKIEKELV-----KSRSRKSYDCLTMVRVHLVELQKWKIAKVVT 134 9*************99887.7777899******9998766.....8889999******************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-6	59	135	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MDGVRFDSNF ANENNDGDED KMNNATEDAT HESVTIPKNV KIAPCIGMEF NSYDKAYAFY 60 NNCAKEVRFE IRVNSHKRKG SKEKCGVVLC CSCQGYKIEK ELVKSRSRKS YDCLTMVRVH 120 LVELQKWKIA KVVTKRRYEN LNFEGKAVKK SCCEIQKAEI AIRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	1e-23	FAR1-related sequence 8