PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC027177.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 276aa    MW: 31859.1 Da    PI: 4.6887
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC027177.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-194396356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                  k++++t eq++ Le+ Fe ++++  +++ +LAk lgL+ rqV +WFqNrRa++k
  EcC027177.10 43 KKRRLTVEQVQFLEKSFEVENKLEPDRKIQLAKDLGLQPRQVAIWFQNRRARWK 96
                  56789************************************************9 PP
2HD-ZIP_I/II127.55.7e-4142132191
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                   ekkrrl+ eqv++LE+sFe e+kLep+rK +la++Lglqprqva+WFqnrRAR+ktkqlEkdye+L++++++lk++ ++L ke ++L++e+
  EcC027177.10  42 EKKRRLTVEQVQFLEKSFEVENKLEPDRKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYETLQASFNTLKSDYDTLIKERNDLKAEV 132
                   69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-2030100IPR009057Homeodomain-like
PROSITE profilePS5007117.3293898IPR001356Homeobox domain
SMARTSM003891.2E-1941102IPR001356Homeobox domain
PfamPF000469.1E-174396IPR001356Homeobox domain
CDDcd000861.28E-174399No hitNo description
Gene3DG3DSA:1.10.10.608.5E-2045105IPR009057Homeodomain-like
PRINTSPR000311.0E-56978IPR000047Helix-turn-helix motif
PROSITE patternPS0002707396IPR017970Homeobox, conserved site
PRINTSPR000311.0E-57894IPR000047Helix-turn-helix motif
PfamPF021832.3E-1498139IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
SRAMVSFEDA HRGNRLNRPF FRSIDPDENG EDDLEDYFHQ PEKKRRLTVE QVQFLEKSFE  60
VENKLEPDRK IQLAKDLGLQ PRQVAIWFQN RRARWKTKQL EKDYETLQAS FNTLKSDYDT  120
LIKERNDLKA EVLNLTDKLL HKGKEKESSE SSSKSSQGLF QNPVADSVSE DEVSRVPIPT  180
CRPEDICSVK SGMFDSESPH YTDAAHSSLL EPGDSSYAFE PDHSDLSQDE EDNLSKSLLS  240
TRNYPKLENS DYAILPPNTC NFGFHAEDPA FWPWSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19098RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028877.10.0PREDICTED: homeobox-leucine zipper protein HAT5
TrEMBLA0A059CYV10.0A0A059CYV1_EUCGR; Uncharacterized protein
STRINGXP_010028877.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-45homeobox 1