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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | EcC027222.10 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 117aa MW: 12805.9 Da PI: 9.2246 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 12.9 | 0.00021 | 1 | 21 | 8 | 28 |
HHHHHHHHHHHHHHHHHCTSC CS
HLH 8 rErrRRdriNsafeeLrellP 28
+Er+RR r++ f++L +l+
EcC027222.10 1 MERNRRIRMKGLFSKLDSLMD 21
6***************99975 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 4.22E-5 | 1 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 117 aa Download sequence Send to blast |
MERNRRIRMK GLFSKLDSLM DMLSQQDAAI QATVAHINQV KEKVDGLKMR KELAMRSNGR 60 QPGALVSGLE VTLISGVDKN SVLSEAISIL KEEGAEAVCA SVSIVGDKVF HTFYAQV |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002279841.1 | 1e-29 | PREDICTED: uncharacterized protein LOC100253569 isoform X1 | ||||
| TrEMBL | A0A218VZD6 | 3e-33 | A0A218VZD6_PUNGR; Uncharacterized protein | ||||
| STRING | VIT_17s0000g08150.t01 | 4e-29 | (Vitis vinifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM1278 | 25 | 92 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G10586.1 | 1e-09 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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