PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC027316.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 162aa    MW: 18155.5 Da    PI: 10.8118
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC027316.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.7e-105297147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g W++eEd  l  +v+  G+ +W++I+r++  g ++k+c++rw + 
     EcC027316.10 52 KGLWSAEEDRVLNGLVEWCGPWNWSLISRHIE-GQSGKSCRLRWCNQ 97
                     678*****************88**********.***********985 PP
2Myb_DNA-binding27.66.7e-09107144443
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                      +++  d+ ++ +++ +G++ W+tIa  ++ gRt++ +k++
     EcC027316.10 107 FSAAKDDAILAVHAVYGNR-WTTIAWLLP-GRTDNAIKNH 144
                      55666889999********.*********.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.11447102IPR017930Myb domain
SuperFamilySSF466894.39E-2549144IPR009057Homeodomain-like
SMARTSM007171.7E-551100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-1953105IPR009057Homeodomain-like
CDDcd001674.56E-75596No hitNo description
PfamPF139212.3E-1255112No hitNo description
SMARTSM007170.0041103151IPR001005SANT/Myb domain
PROSITE profilePS512948.791103156IPR017930Myb domain
CDDcd001671.31E-4106144No hitNo description
Gene3DG3DSA:1.10.10.601.5E-15106144IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MVLLFAYVEC KTHLIFFRSS PACSSSSSNS SSFNSSSRKN PASSTRKINR VKGLWSAEED  60
RVLNGLVEWC GPWNWSLISR HIEGQSGKSC RLRWCNQLSP DIKHRPFSAA KDDAILAVHA  120
VYGNRWTTIA WLLPGRTDNA IKNHGTPLSR EGPPRSRRTT GQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2751144699B-MYB
1gv2_A1e-2751144396MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-2751144396C-Myb DNA-Binding Domain
1msf_C1e-2751144396C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061776.17e-63PREDICTED: transcription factor MYB44
SwissprotQ9SN121e-38MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A059BRN82e-61A0A059BRN8_EUCGR; Uncharacterized protein
STRINGXP_010061776.13e-62(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145531122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.13e-42myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]