PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC027623.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 127aa    MW: 14506.8 Da    PI: 8.5218
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC027623.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.48.1e-1121112281
                   EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS.............-EEEEEE..EEETTEEEE-TTHHH.HHHHHT--TT-EEE CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesg.............rsWevkliyrkksgryvltkGWke.FvkangLkegDfvv 81 
                   +k+lt sdv+ s+rl lp +++++    +    e+++ ++e+++g              +  +++  +++ g+yvl +GW + Fvk+ gLk+gD + 
  EcC027623.20  21 KKKLTESDVNHSARLLLPLDCLKADvfpK--MGEGMMKRVESRDGmgvhvldmdtdheHQLVFRH--WGS-GSYVLNSGWTKlFVKERGLKVGDEIG 112
                   699*******************9999652..4467777788888888888888878556666666..887.59*******876***********665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.22E-1416125IPR015300DNA-binding pseudobarrel domain
CDDcd100175.33E-1518127No hitNo description
PfamPF037541.2E-52098IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.104.6E-1320117IPR015300DNA-binding pseudobarrel domain
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
RNILSDVSTE LVLGRDPWKI KKKLTESDVN HSARLLLPLD CLKADVFPKM GEGMMKRVES  60
RDGMGVHVLD MDTDHEHQLV FRHWGSGSYV LNSGWTKLFV KERGLKVGDE IGMFWDGVPA  120
KFHFKVL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058663.17e-45PREDICTED: gibberellin 2-beta-dioxygenase 8
RefseqXP_010058760.14e-46PREDICTED: B3 domain-containing protein At2g33720-like
TrEMBLA0A059C5473e-47A0A059C547_EUCGR; Uncharacterized protein
STRINGXP_010058755.14e-47(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.14e-24B3 family protein