PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC027671.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 184aa    MW: 20614.3 Da    PI: 6.3537
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC027671.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.46.1e-1435121899
                   -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    d+l+sg l +pkkf+ ++g++   s  + l+ + +  W++ +  +k+ +  ++l kGW+eF +   +  g  +vFk++g+s+f  +v++f+k
  EcC027671.10  35 CDTLESGKLGIPKKFLGRYGKD--LSSLVLLKVLGSSPWTIGV--EKCNDDeVWLWKGWREFMQHYSIGLGHLIVFKYKGSSTF--RVMIFNK 121
                   5889999************977..777899999**********..66655559**************************98998..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.04E-2025122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-2025122IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-1127120No hitNo description
PROSITE profilePS5086312.09728122IPR003340B3 DNA binding domain
SMARTSM010193.5E-929122IPR003340B3 DNA binding domain
PfamPF023622.6E-1135121IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MARRRRRPGE DGGVDPDAAA GPRLESPHFF KIILCDTLES GKLGIPKKFL GRYGKDLSSL  60
VLLKVLGSSP WTIGVEKCND DEVWLWKGWR EFMQHYSIGL GHLIVFKYKG SSTFRVMIFN  120
KSSSEINYSS SSISNLGSGF ISPEWEDVIE MEDSEDSASH QKMRVEPHSP CPQLSPSCSS  180
QDLE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010068262.11e-102PREDICTED: B3 domain-containing transcription factor VRN1
TrEMBLA0A059BB472e-77A0A059BB47_EUCGR; Uncharacterized protein
STRINGXP_010068262.11e-101(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-17B3 family protein