PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC027934.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 254aa MW: 27747.6 Da PI: 5.8559

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC027934.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.1	5.5e-15	5	44	6	47
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 eEd +++ a++ +G++ W++Iar ++ gRt++ +k++w++ EcC027934.10 5 DEEDRIIIGAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 44 59*************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.407	1	49	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.6E-18	5	46	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-8	5	47	IPR001005	SANT/Myb domain
CDD	cd00167	4.48E-11	5	45	No hit	No description
SuperFamily	SSF46689	1.2E-12	5	48	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-12	6	44	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006468	Biological Process	protein phosphorylation
GO:0003677	Molecular Function	DNA binding
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MSVADEEDRI IIGAHAIHGN KWASIARLLP GRTDNAIKNH WNSTLRRRST ELEKIKVEGS 60 NTVDDASLDR VKASSEETLS CGEANSPKSL EGKDVSSLEN TSNQYEEKSM QKDQFNHGPK 120 GQPTLFRPVA RVSAFNAYNR SDGPQPALPF VGSVPASEHI GQALKQDHGF SRLLNDVYGE 180 RLVPHNCGYG CCDGNNAAGA QNSLLGPEFV EYLEPQSFPN YELASIAADI SNLAWLRSGL 240 DNNSVRTKDD RAGH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-17	2	48	61	107	B-MYB
1mbj_A	7e-17	2	48	5	51	MYB PROTO-ONCOGENE PROTEIN
1mbk_A	7e-17	2	48	5	51	MYB PROTO-ONCOGENE PROTEIN
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010037759.1	0.0	PREDICTED: myb-related protein A
Swissprot	Q42575	7e-71	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A059A764	0.0	A0A059A764_EUCGR; Uncharacterized protein
STRING	XP_010037759.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	3e-73	myb domain protein 1

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]