PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC028212.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 249aa MW: 27564.8 Da PI: 6.1489

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC028212.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.8e-12	64	137	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC.........................TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas......................kapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P+a + p ++Ka+ L ++v+++++L EcC028212.10 64 KNHSEAERRRRARINAHLDTLRGLVPEAKksvalycqcccnlrfmgmlaklQIPMSQMDKAALLAEVVNHLRKL 137 58***********************888****************9999999************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-11	56	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.227	61	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.8E-10	64	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-13	65	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-9	67	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	1.7E-6	177	223	No hit	No description
SuperFamily	SSF55021	8.65E-5	177	224	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MGDSDFEVLS DDPRVEPGIR ALQRNGSSSY SSLVLDSERG ELVEASVSAK RKAPPAERNV 60 DALKNHSEAE RRRRARINAH LDTLRGLVPE AKKSVALYCQ CCCNLRFMGM LAKLQIPMSQ 120 MDKAALLAEV VNHLRKLKGN AEEAMRQYVI PTDADEIKVE QEQGEVVDLE FETIKASLCC 180 DYRPGLLSNL RRVLVDLGLI VLSAEVATLE GRMKSIMELT SHVGDKTLCQ VLSSSLRLAL 240 CSMVDQFST

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010035845.1	1e-141	PREDICTED: transcription factor bHLH30
Refseq	XP_010035846.1	1e-141	PREDICTED: transcription factor bHLH30
TrEMBL	A0A059A0U6	1e-139	A0A059A0U6_EUCGR; Uncharacterized protein
STRING	XP_010035845.1	1e-140	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	8e-18	bHLH family protein