PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC028332.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 136aa MW: 15868 Da PI: 8.0612

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC028332.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	81.1	2.4e-25	5	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lp G+rF P+dee+ ++ L++kv+g+ + e+i+e+d+y+ ePw++ ++ ek++y F+k + k+ +r +r++ sgyWk + ++ ++ ++ EcC028332.10 5 LPLGYRFCPSDEEVFSYCLAPKVQGHVVFP-EFIREFDVYEKEPWKFF--NENAEKSLYVFTKLKMKK---SRVERTAGSGYWKGAKN-TDFKDCHS 94 699********************99555.79**********6..34567899998875...69*******7755.55566589 PP NAM 98 elvglkktLvfy.....kgrapkgektdWvmheyrl 128 + +g kk L f + +++++ek +W+mhey++ EcC028332.10 95 NIIGQKKHLNFKvkdssSFDSQNAEKGSWIMHEYSM 130 9*******8776545889999*******86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-26	4	133	IPR003441	NAC domain
PROSITE profile	PS51005	28.293	5	136	IPR003441	NAC domain
Pfam	PF02365	1.4E-18	6	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003714	Molecular Function	transcription corepressor activity

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MADTLPLGYR FCPSDEEVFS YCLAPKVQGH VVFPEFIREF DVYEKEPWKF FNENAEKSLY 60 VFTKLKMKKS RVERTAGSGY WKGAKNTDFK DCHSNIIGQK KHLNFKVKDS SSFDSQNAEK 120 GSWIMHEYSM PNQEVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-16	4	130	16	142	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-16	4	130	16	142	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-16	4	130	16	142	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-16	4	130	16	142	NO APICAL MERISTEM PROTEIN
3swm_A	2e-16	4	130	19	145	NAC domain-containing protein 19
3swm_B	2e-16	4	130	19	145	NAC domain-containing protein 19
3swm_C	2e-16	4	130	19	145	NAC domain-containing protein 19
3swm_D	2e-16	4	130	19	145	NAC domain-containing protein 19
3swp_A	2e-16	4	130	19	145	NAC domain-containing protein 19
3swp_B	2e-16	4	130	19	145	NAC domain-containing protein 19
3swp_C	2e-16	4	130	19	145	NAC domain-containing protein 19
3swp_D	2e-16	4	130	19	145	NAC domain-containing protein 19
4dul_A	2e-16	4	130	16	142	NAC domain-containing protein 19
4dul_B	2e-16	4	130	16	142	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010065056.1	2e-93	PREDICTED: NAC domain-containing protein 19
TrEMBL	A0A059BXU7	2e-94	A0A059BXU7_EUCGR; Uncharacterized protein
STRING	XP_010065056.1	1e-92	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	1e-17	NAC domain containing protein 3