PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC028332.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 149aa    MW: 17414.7 Da    PI: 8.4418
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC028332.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.24.7e-21131352128
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                   p G+rF P++++l  +yL kkveg++  +  +++evdiy   +Pw++   ++ ++++ + F++ +     ++r +r++ sg+W+  g+++++++++g
  EcC028332.30  13 PTGYRFCPSENDLFFHYLSKKVEGDSEAIPPFMPEVDIYGDdDPWEIF-DAD-SQESFHVFTRLKI---IKSRVKRTAGSGIWS-NGNKRTIVDSRG 103
                   89************************999888*******8659****5.332.2344566666544...4579**********8.6888999999** PP

           NAM  98 elvglkktLvfy..kgrapkgektdWvmheyrl 128
                    +vg  + ++f   +gr +k+++ +W+mhe ++
  EcC028332.30 104 DTVGYNELFTFKslTGR-EKTKNGRWTMHEHSM 135
                   ***********953344.455899******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-216138IPR003441NAC domain
PROSITE profilePS5100523.07112149IPR003441NAC domain
PfamPF023651.7E-1313134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003714Molecular Functiontranscription corepressor activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MERKKIKPME GYPTGYRFCP SENDLFFHYL SKKVEGDSEA IPPFMPEVDI YGDDDPWEIF  60
DADSQESFHV FTRLKIIKSR VKRTAGSGIW SNGNKRTIVD SRGDTVGYNE LFTFKSLTGR  120
EKTKNGRWTM HEHSMKGQEV FRFLKFDLL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039249.11e-94PREDICTED: NAC domain-containing protein 2-like
STRINGXP_010039249.15e-94(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13343727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-10NAC family protein