PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC028520.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

WRKY

Protein Properties

Length: 140aa MW: 15418.6 Da PI: 10.1175

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC028520.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.4	1.1e-31	68	125	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYegeHnh+ EcC028520.10 68 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPGMLIVTYEGEHNHS 125 99**********************988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	6.2E-17	19	64	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.1E-33	54	126	IPR003657	WRKY domain
PROSITE profile	PS50811	30.228	61	127	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-27	64	126	IPR003657	WRKY domain
SMART	SM00774	2.1E-38	66	126	IPR003657	WRKY domain
Pfam	PF03106	3.2E-27	68	124	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
HHLSQVSSAD KPPLSYSLKR KCSSMDDAAL KCGSSSGKCH CSNKRKSRLK RVVRVPAVSS 60 KMADIPPDDF SWRKYGQKPI KGSPHPRGYY KCSSVRGCPA RKHVERALDD PGMLIVTYEG 120 EHNHSQSVAD VKAPLVLESS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-22	54	124	2	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010059897.1	4e-96	PREDICTED: probable WRKY transcription factor 7
Swissprot	O22176	1e-58	WRK15_ARATH; Probable WRKY transcription factor 15
Swissprot	Q9STX0	1e-58	WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBL	A0A059BJH6	7e-94	A0A059BJH6_EUCGR; Uncharacterized protein
STRING	XP_010059897.1	2e-95	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1715	28	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	2e-45	WRKY DNA-binding protein 15

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Liu F, et al. Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection. Plant Biotechnol. J., 2018. 16(4): p. 911-925 [PMID:28929638]