PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC028654.70
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 210aa    MW: 24280.4 Da    PI: 7.9829
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC028654.70genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.39.6e-201461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT eEd++l d+v+++G g+W++Iar+ g++R++k+c++rw +yl
     EcC028654.70 14 RGLWTVEEDKILMDYVTEHGRGQWNSIARRTGLRRCGKSCRLRWMNYL 61
                     788*******************************************97 PP
2Myb_DNA-binding61.91.4e-1967112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r+ +T+eE++l+v+++++lG++ W++Ia++++ gRt++q+k++w++yl
     EcC028654.70  67 RDHFTEEEEDLIVRLHNLLGNR-WSLIAKRVP-GRTDNQVKNYWNTYL 112
                      6789******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.354961IPR017930Myb domain
SuperFamilySSF466892.08E-3112108IPR009057Homeodomain-like
SMARTSM007171.7E-141363IPR001005SANT/Myb domain
PfamPF002495.0E-171461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-241568IPR009057Homeodomain-like
CDDcd001671.63E-111761No hitNo description
PROSITE profilePS5129428.18462116IPR017930Myb domain
SMARTSM007172.2E-1866114IPR001005SANT/Myb domain
PfamPF002492.1E-1867112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2669116IPR009057Homeodomain-like
CDDcd001677.86E-1470112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006470Biological Processprotein dephosphorylation
GO:0006508Biological Processproteolysis
GO:0009435Biological ProcessNAD biosynthetic process
GO:0015074Biological ProcessDNA integration
GO:0015976Biological Processcarbon utilization
GO:0055114Biological Processoxidation-reduction process
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0004089Molecular Functioncarbonate dehydratase activity
GO:0004252Molecular Functionserine-type endopeptidase activity
GO:0005515Molecular Functionprotein binding
GO:0008138Molecular Functionprotein tyrosine/serine/threonine phosphatase activity
GO:0008270Molecular Functionzinc ion binding
GO:0008734Molecular FunctionL-aspartate oxidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MTKTEGGGGS QLKRGLWTVE EDKILMDYVT EHGRGQWNSI ARRTGLRRCG KSCRLRWMNY  60
LSPDIKRDHF TEEEEDLIVR LHNLLGNRWS LIAKRVPGRT DNQVKNYWNT YLSKKLGIKK  120
QICQVGRTKS RILHISESST HKDSISSCAG NSRSAEMNVD KSPESQEMLD LPELTSREEY  180
STPSFWDFES DLEMNLSMME FLDGHSLPSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2981161108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumulation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching. {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15668208, ECO:0000269|PubMed:15728674}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029175.11e-155PREDICTED: transcription factor MYB23 isoform X2
SwissprotQ962762e-71MYB23_ARATH; Transcription factor MYB23
TrEMBLA0A059APY41e-154A0A059APY4_EUCGR; Uncharacterized protein
STRINGXP_010029175.11e-155(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40330.18e-74myb domain protein 23
Publications ? help Back to Top
  1. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  2. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]
  3. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  4. Kohanová J, et al.
    Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
    Ann. Bot., 2018. 122(5): p. 903-914
    [PMID:29394308]