PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC028693.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 72aa MW: 7958.28 Da PI: 10.4611

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC028693.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56.3	4.1e-18	11	54	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i ++ r vt+skRr+g++ KA+ L+ LC+a+vav++fs+ gk EcC028693.10 11 EIADQAARLVTYSKRRKGLFNKASQLCRLCGARVAVLVFSPAGK 54 588999***********************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.0E-19	2	61	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	19.231	2	62	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.14E-22	4	71	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-13	4	24	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.8E-21	12	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-13	24	39	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-13	39	60	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 72 aa Download sequence Send to blast
MGKRRRTEIA EIADQAARLV TYSKRRKGLF NKASQLCRLC GARVAVLVFS PAGKPCSFGD 60 PSVDEIIGDY LR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010045944.1	7e-42	PREDICTED: MADS-box protein SOC1-like
Refseq	XP_010046035.1	5e-42	PREDICTED: MADS-box transcription factor 50-like
Refseq	XP_018718484.1	1e-43	PREDICTED: agamous-like MADS-box protein AGL29
Swissprot	Q4PSU4	4e-20	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	A0A059D1D1	1e-39	A0A059D1D1_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010045944.1	3e-41	(Eucalyptus grandis)
STRING	XP_010045950.1	1e-41	(Eucalyptus grandis)
STRING	XP_010046035.1	2e-41	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-22	AGAMOUS-like 61

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]