PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC029058.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 218aa    MW: 24144.3 Da    PI: 8.3251
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC029058.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.54.6e-35161421128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                   lppGf F+Ptdee++ eyL++k+ + +l++ ++i+e+ ++ +++PwdL      +e+  yfFs+ + ++   +   rat+ gyWka+g  k++  + 
  EcC029058.20  16 LPPGFVFEPTDEEILFEYLRRKIFALPLPA-SIIPELiNLSNLDPWDLL---GDGEQGRYFFSNLAGAN---NAVIRATSCGYWKAQGVPKQISPSs 105
                   79****************************.6777777**********5...5678899****998875...57999****************9876 PP

           NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++  vg+kktLv+++gr p+g++t+Wvmheyrl
  EcC029058.20 106 sdahNRMIVGMKKTLVYHRGRPPHGSRTSWVMHEYRL 142
                   66655566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-429172IPR003441NAC domain
PROSITE profilePS5100542.46216172IPR003441NAC domain
PfamPF023657.2E-2217142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MAKLNQIRAI GSMSKLPPGF VFEPTDEEIL FEYLRRKIFA LPLPASIIPE LINLSNLDPW  60
DLLGDGEQGR YFFSNLAGAN NAVIRATSCG YWKAQGVPKQ ISPSSSDAHN RMIVGMKKTL  120
VYHRGRPPHG SRTSWVMHEY RLVPSPSAAR GPQLNSWVSE LGRWVMCRVF VKTTSSSSSR  180
SDSTSMDVLS SSSSSSRSCL TEDSSSGDEE QTSEWFCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-281617820174NAC domain-containing protein 19
3swm_B2e-281617820174NAC domain-containing protein 19
3swm_C2e-281617820174NAC domain-containing protein 19
3swm_D2e-281617820174NAC domain-containing protein 19
3swp_A2e-281617820174NAC domain-containing protein 19
3swp_B2e-281617820174NAC domain-containing protein 19
3swp_C2e-281617820174NAC domain-containing protein 19
3swp_D2e-281617820174NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036866.11e-159PREDICTED: NAC domain-containing protein 83
TrEMBLA0A059A4691e-158A0A059A469_EUCGR; Uncharacterized protein
STRINGXP_010036866.11e-158(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.12e-50NAC domain containing protein 41