PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC029150.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LSD
Protein Properties Length: 78aa    MW: 8506.21 Da    PI: 8.2566
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC029150.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD123.31.1e-07630125
       zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                  Cg+C+ l+sY +G ++V+C +C t+
  EcC029150.10  6 CGSCQRLISYQPGTKYVQCLCCKTI 30
                  **********************997 PP
2zf-LSD136.96.2e-124468125
       zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                  Cg C  lL+YP+GAp+V+C+ C  V
  EcC029150.10 44 CGTCAMLLMYPYGAPAVKCSACRSV 68
                  **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.1E-10333IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-6630IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.5E-104170IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-104468IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0005665Cellular ComponentDNA-directed RNA polymerase II, core complex
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0032549Molecular Functionribonucleoside binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MAQMVCGSCQ RLISYQPGTK YVQCLCCKTI NFVLEEHQVG QVKCGTCAML LMYPYGAPAV  60
KCSACRSVTE IGVCKLFA
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057425.11e-45PREDICTED: actin cytoskeleton-regulatory complex protein PAN1
SwissprotO654265e-30LOL2_ARATH; Protein LOL2
TrEMBLA0A059C9I83e-44A0A059C9I8_EUCGR; Uncharacterized protein
STRINGXP_010057425.16e-45(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.12e-32lsd one like 2