PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC029749.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 250aa    MW: 27894.7 Da    PI: 8.5664
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC029749.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.7e-18115169256
                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   rk+ +++k q  +Lee F+ + +++++++ +LA++l L  rqV vWFqNrRa+ k
  EcC029749.10 115 RKKLRLSKAQSSILEESFKAHTTLNTKQKHDLANRLTLRPRQVEVWFQNRRARTK 169
                   788899***********************************************98 PP
2HD-ZIP_I/II118.24.6e-38115203190
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                   +kk+rlsk q+++LEesF+++++L++++K++la++L l+prqv+vWFqnrRARtk+kq+E+++e+Lk+++++lkeen+rL+ke +eL+ +
  EcC029749.10 115 RKKLRLSKAQSSILEESFKAHTTLNTKQKHDLANRLTLRPRQVEVWFQNRRARTKLKQTEVECEMLKKCCETLKEENRRLKKELQELK-S 203
                   69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.244111171IPR001356Homeobox domain
SMARTSM003892.3E-12113175IPR001356Homeobox domain
SuperFamilySSF466893.46E-16113179IPR009057Homeodomain-like
CDDcd000863.90E-13114172No hitNo description
Gene3DG3DSA:1.10.10.602.9E-16114176IPR009057Homeodomain-like
PfamPF000462.5E-15115169IPR001356Homeobox domain
PROSITE patternPS000270146169IPR017970Homeobox, conserved site
PfamPF021834.3E-10171205IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-17171214IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MCPIDSGRSF DTSLSLGLGC YGDPEDHEIK IKKXXXXXXX XCLTIGLPGG KACGLGSASG  60
DEVRNIPSRS ASSFSNSSSA KREKAEQGEE EAVERGTGSP RATINIEDED EFSPRKKLRL  120
SKAQSSILEE SFKAHTTLNT KQKHDLANRL TLRPRQVEVW FQNRRARTKL KQTEVECEML  180
KKCCETLKEE NRRLKKELQE LKSLKPTASV YRQIPAAALP LCPSCERIAH PEFPFSTESR  240
LWPAHPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163171RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061603.11e-164PREDICTED: homeobox-leucine zipper protein HAT22
SwissprotP466043e-58HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A059BRL61e-162A0A059BRL6_EUCGR; Uncharacterized protein
STRINGXP_010061603.11e-163(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-42HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]