PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC030345.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 183aa    MW: 21021.8 Da    PI: 8.2325
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC030345.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.29.1e-181563149
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                  krien+ +r +tfskRr gi K A+EL +LC aev v+++s++g+ + +
  EcC030345.10 15 KRIENEERRLITFSKRRSGICKIASELVTLCRAEVGVLVLSPSGNPFSF 63
                  79*****************************************986666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.516767IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-20766IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-15929IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-221082IPR002100Transcription factor, MADS-box
PfamPF003192.1E-191663IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAGKQTREHQ RIEMKRIENE ERRLITFSKR RSGICKIASE LVTLCRAEVG VLVLSPSGNP  60
FSFAHPSIDT VANQFLNRNP PSIDGSYALV ESNRQARINE LNQQYDELIN QIKVEEARNK  120
VLKQLTEGKG NGAWWEAPIE ELNLEELHQM EVRMEDLRRS LWMSINQRTQ GKASKSIQGQ  180
SFD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059071.11e-125PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A059C7981e-125A0A059C798_EUCGR; Uncharacterized protein
STRINGXP_010059071.11e-124(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-37AGAMOUS-like 62