PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC030452.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 319aa    MW: 35871.4 Da    PI: 9.5351
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC030452.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.7e-08132173240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W +eE ell ++ +++++g   +W+ I++++g+gR+ +++
     EcC030452.20 132 KPWGKEEIELLRKGMTKYPKGtshRWEVISEYIGTGRSVEEI 173
                      69************************************9876 PP
2Myb_DNA-binding29.91.3e-09262306345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                       W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
     EcC030452.20 262 VWSAVQERALVQALKTFPKDtnqRWERVAAAVP-GKTVNQCKKKFA 306
                      7********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-4126173IPR009057Homeodomain-like
SuperFamilySSF466891.64E-7128174IPR009057Homeodomain-like
PROSITE profilePS512936.128129184IPR017884SANT domain
SMARTSM007179.3E-5130183IPR001005SANT/Myb domain
PfamPF002494.5E-6132173IPR001005SANT/Myb domain
CDDcd001671.99E-4133173No hitNo description
PROSITE profilePS5129311.093258313IPR017884SANT domain
SMARTSM007171.0E-9259311IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-6260305IPR009057Homeodomain-like
SuperFamilySSF466896.43E-10261316IPR009057Homeodomain-like
PfamPF002494.5E-8262305IPR001005SANT/Myb domain
CDDcd001674.73E-7263309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
EEKRRKEEDE KRAAEAALQQ KKVKEREKKL LRKERTRLRT VSAPIISQHL LDLSEDDVET  60
LCMSLDIEAL RSLCGQMEGS EGLERAEFLR NARGGQPKSE DKKQGDKKNE QPNSSVEANG  120
SVPLSNFEKQ EKPWGKEEIE LLRKGMTKYP KGTSHRWEVI SEYIGTGRSV EEILKATKTV  180
LLQKPDSSKA FDSFLEKRKP AQSIASPLTT REEVGETIIP TAESTAVKMD NGEASSRKVV  240
NNQDPNDLVT ENGSSSSSEQ DVWSAVQERA LVQALKTFPK DTNQRWERVA AAVPGKTVNQ  300
CKKKFALLKE SFRNKKSSV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067661.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A059BI980.0A0A059BI98_EUCGR; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-102DnaJ domain ;Myb-like DNA-binding domain