PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC030454.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB

Protein Properties

Length: 165aa MW: 19046.8 Da PI: 9.0769

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC030454.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl EcC030454.20 14 KGAWTKEEDDKLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	60.7	3e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEde++++++ +lG++ W++Ia +++ gRt++++k++w+++ EcC030454.20 67 RGNFTEEEDEIIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.601	9	61	IPR017930	Myb domain
SMART	SM00717	7.7E-14	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.52E-30	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.35E-10	16	61	No hit	No description
PROSITE profile	PS51294	29.31	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	9.2E-18	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-17	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	3.41E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0003677	Molecular Function	DNA binding
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDDKLIAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDEIIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLNRG 120 IDPATHRLIN EPAQDHHDEP TISFAANSKE IKEMKNNAEL NFMCN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-30	13	116	26	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010066271.1	1e-120	PREDICTED: myb-related protein 308
Swissprot	P81393	4e-95	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A059BDC2	1e-118	A0A059BDC2_EUCGR; Uncharacterized protein
TrEMBL	I0IK11	1e-118	I0IK11_EUCGG; MYB transcription factor 1
TrEMBL	Q70KC4	1e-118	Q70KC4_EUCGU; MYB transcription factor
STRING	XP_010066271.1	1e-119	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	4e-93	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]