PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC030492.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YA
Protein Properties Length: 193aa    MW: 21365.7 Da    PI: 9.2038
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC030492.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.92.1e-30101159158
     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekk.ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   +ep++VNaKQy++Il+RRq+Rak+e e+k l++++ +pylheSRh hAlrR+Rg+gGrF
  EcC030492.10 101 EEPVFVNAKQYHGILRRRQSRAKAELENKaLKSRKLQPYLHESRHLHALRRARGCGGRF 159
                   69**************************955566668*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.9E-3399162IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.89100162IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-25102159IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.6E-22103125IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860105125IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.6E-22136159IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
NGEADEQQKI SEQHESSPAT GVPHPGVSLP NVQYATPPQL GAGHAMTPPA YPYPDPYYRS  60
IFAPYDAQSY PQQPYGAQPM VHLQLMGIQQ AGVPLPSDAV EEPVFVNAKQ YHGILRRRQS  120
RAKAELENKA LKSRKLQPYL HESRHLHALR RARGCGGRFL NAKKDENQQS EVSSADKSQG  180
NINLNSDKSD RSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-18100167166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036606.11e-124PREDICTED: nuclear transcription factor Y subunit A-7 isoform X2
SwissprotQ84JP13e-61NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A059A2621e-123A0A059A262_EUCGR; Uncharacterized protein
STRINGXP_010036604.11e-123(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.25e-54nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]