PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC030907.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 187aa    MW: 21261.2 Da    PI: 7.7452
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC030907.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-081260555
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                   + +Er+RR++ +  +++L +l+ + +   p +  s  + L +A++YIk+Lq
  EcC030907.10 12 RKLIERNRRHHTKALYSQLNSLVHHhS---PTEVTSLPDQLHEATNYIKKLQ 60
                  5789*********************55...8888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-10674IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.544759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-9973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-51360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MENGPSSSKS DRKLIERNRR HHTKALYSQL NSLVHHHSPT EVTSLPDQLH EATNYIKKLQ  60
INLEKMKEKK ESLLGIAKMN TSMNNGMDVA SNSPEIEIHQ SGSALQVILI TGLDHQFMFN  120
RVISLLHEDG VKILNASFSI LEDKAFHSVH CEVGDCAPSL DSARIYERLR KCIQDNAQRR  180
LFQTLDF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052302.11e-133PREDICTED: uncharacterized protein LOC104441008
RefseqXP_018727726.11e-133PREDICTED: uncharacterized protein LOC104441008
TrEMBLA0A059CDG51e-132A0A059CDG5_EUCGR; Uncharacterized protein
STRINGXP_010052302.11e-133(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.17e-36bHLH family protein