PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC031144.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 141aa    MW: 15597.8 Da    PI: 8.4989
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC031144.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS130.42e-401141232374
          GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                   k+l P+vv +veqe++ n+++F +r+ eal yy al++s+e+++ r+++er+  E+  l+r++ n vac+g++r+er+e +e+Wr+r+++aGF+  p
  EcC031144.20   1 KGLAPRVVALVEQEMNGNTAPFPTRVGEALAYYGALLESIESTVLRDDSERARAEEG-LSRRLGNSVACKGRDRVERCEVFEEWRARMGMAGFELKP 96 
                   689******************************************************.*************************************** PP

          GRAS 329 lsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   l++++ + +  l++ v+  g++ +ee+  +++gW++r+L+++SaWr
  EcC031144.20  97 LGQRMGQGVAQLMNLVN-PGHTGKEENVGFCFGWRGRTLIVASAWR 141
                   ****************9.99*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.3891122IPR005202Transcription factor GRAS
PfamPF035146.8E-381141IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
KGLAPRVVAL VEQEMNGNTA PFPTRVGEAL AYYGALLESI ESTVLRDDSE RARAEEGLSR  60
RLGNSVACKG RDRVERCEVF EEWRARMGMA GFELKPLGQR MGQGVAQLMN LVNPGHTGKE  120
ENVGFCFGWR GRTLIVASAW R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-133140241378Protein SCARECROW
5b3h_A1e-133140240377Protein SCARECROW
5b3h_D1e-133140240377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060571.16e-69PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR79e-55SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A059DIP41e-67A0A059DIP4_EUCGR; Uncharacterized protein
STRINGXP_010060571.12e-68(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.14e-57SCARECROW-like 8