PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC031199.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 192aa    MW: 20906 Da    PI: 5.3247
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC031199.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-05110132123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++Cp+C+k+F +   L  H ++H
  EcC031199.10 110 FECPYCHKVFDSGQALGGHKKVH 132
                   89**********99999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.49E-670132No hitNo description
PROSITE profilePS5015710.0767097IPR007087Zinc finger, C2H2
SMARTSM003550.0987092IPR015880Zinc finger, C2H2-like
PfamPF139128.6E-117094IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
PfamPF139122.6E-11109132IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076110132IPR007087Zinc finger, C2H2
SMARTSM003550.018110132IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
NADVEQVISS VSETETLSEA DGALCLMMLS RGKWPKRSSA ETDGHEEDDG DDSVSVTQMN  60
GRAGSSRPKY RCETCNKGFG SYQALGGHRA SHKKTSEENL IGHNHKRLAF ECPYCHKVFD  120
SGQALGGHKK VHNEAITVTA KSKNCDAGES LIDLNLPAPE ENGEETTASL VEISSVSNEE  180
TFYPIKRTLF QV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038418.11e-140PREDICTED: zinc finger protein ZAT1
TrEMBLA0A058ZY511e-116A0A058ZY51_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010038418.11e-139(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.16e-32C2H2-like zinc finger protein