PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC031301.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 122aa MW: 13388.1 Da PI: 4.7107

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC031301.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	54.8	2.8e-17	2	53	49	100
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 lp +r da+sslvyeA ar+rdPvyG+vg i+ lq+q++ql+++la++++e EcC031301.10 2 LPVCQRADAVSSLVYEASARVRDPVYGCVGAISYLQNQVSQLQTQLAVAQAE 53 57789*******************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.355	1	54	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-15	2	51	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
ELPVCQRADA VSSLVYEASA RVRDPVYGCV GAISYLQNQV SQLQTQLAVA QAEIMCFQMQ 60 QDSAVMQLPR MMDVPDDDRS SSPFLLPNNL THFLNLSPAS SGNVTHDHSL KRESILGHDV 120 VS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-17	1	55	58	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-17	1	55	58	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031173.1	3e-83	PREDICTED: LOB domain-containing protein 12
Swissprot	Q8LBW3	3e-30	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A059A9Y5	6e-82	A0A059A9Y5_EUCGR; Uncharacterized protein
STRING	XP_010031173.1	1e-82	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-32	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]