PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC031687.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 102aa    MW: 11450.3 Da    PI: 8.3998
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC031687.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26051.82.3e-162773147
        DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47
                  +C  Ck+ +r+Ca+dCv+ap  pa++p+kfanvh++FGasnv k+ +
  EcC031687.10 27 PCTLCKLPQRRCAQDCVFAPNCPADEPHKFANVHEVFGASNVNKMFQ 73
                  7*******************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.66926102IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-152773IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
LCAHFDQRRG RTMKESGGGW KPGMPSPCTL CKLPQRRCAQ DCVFAPNCPA DEPHKFANVH  60
EVFGASNVNK MFQVRPLFSF LSPFVLHLHP PDSNSLILPE FI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-142276660LOB family transfactor Ramosa2.1
5ly0_B1e-142276660LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058727.14e-38PREDICTED: B3 domain-containing protein At2g33720
SwissprotQ9SHE99e-23LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A059C5B24e-39A0A059C5B2_EUCGR; Uncharacterized protein
STRINGXP_010058727.12e-37(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.14e-25LOB domain-containing protein 4