PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC031757.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 659aa    MW: 73803.5 Da    PI: 6.605
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC031757.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.61.4e-12116166156
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwen 56 
                   +Wt +evlaL ++r+ me+++ +       We++s+k++e gf+r++ +Ck+k+e+
  EcC031757.10 116 QWTSDEVLALFKIRSGMENWFPEF-----IWEHISRKLAELGFRRTAAECKDKFEE 166
                   7********************998.....9************************96 PP
2trihelix95.16.5e-30503598186
      trihelix   1 rWtkqevlaLiearr...........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                   rW+++ev+aLi++r            ++e + ++g+ ++plWe++s+km+e g+ers+k+Ckekwen+nk+++k+k+++kkr s +s+tcpyf+ql 
  EcC031757.10 503 RWPRDEVQALINLRCslyggtnnedhKLEGSNNNGNNRAPLWERISQKMSELGYERSAKRCKEKWENINKYFRKTKDNDKKR-SLDSRTCPYFHQLS 598
                   8**************899999988888888888899*********************************************8.9999********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071725113170IPR001005SANT/Myb domain
PfamPF138373.8E-8115166No hitNo description
PROSITE profilePS500906.121117168IPR017877Myb-like domain
SMARTSM007170.062500573IPR001005SANT/Myb domain
CDDcd122031.52E-23502578No hitNo description
PfamPF138379.0E-20502599No hitNo description
PROSITE profilePS500906.679503571IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MFDGVPDQFH QFLASSRASS LSLPLSFPLQ HASSPPPPSL ASLNFAAFDL YPPQHHHLQQ  60
PPPQFLQPLH QPPRAQKDII HEEIDGENSL VPVNLGIDQR ERSKLAEAAT VDDDRQWTSD  120
EVLALFKIRS GMENWFPEFI WEHISRKLAE LGFRRTAAEC KDKFEEESIS SYTPASASYP  180
KNDRLLSELE ELCNSNHGDH QNNPPILAAD KSTDNKVGKL RAGEEEDKMA GQMIQNFDGT  240
NSRNELRATV NDASEQNYKK AATDDKDHIN RSSSKGKKRK RSQEERLVKY ELFKGLCESV  300
VQRLMAQQEE MHNKLLEDMV RREKEMVEKE EAWKRQEMER MNKELDARAH EQAIAGNRQA  360
TIIEFLKKFT SFDGDDDHSP HLLSNSSSPC SLAEPNSSNP NDNSSTSHMG THKQSHAAEV  420
PTSSFLENHN HSTCSSSFQS TPTKQDPSSA SAAMAQTESR SNPPTLTAMT PQNPNPPNPH  480
QKTHHGSQSS APNAAKDQDL GKRWPRDEVQ ALINLRCSLY GGTNNEDHKL EGSNNNGNNR  540
APLWERISQK MSELGYERSA KRCKEKWENI NKYFRKTKDN DKKRSLDSRT CPYFHQLSHL  600
YSQGKLAATA TATATATVPP ADQPLPATSA HGDSSAAQLS AGRDKDVANQ VAPAANFEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276281KKRKRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025058.10.0PREDICTED: trihelix transcription factor GTL2
TrEMBLA0A059B6010.0A0A059B601_EUCGR; Uncharacterized protein
STRINGXP_010025058.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.14e-66Trihelix family protein