PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC031900.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 170aa    MW: 18798 Da    PI: 9.0974
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC031900.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.19.3e-36361272102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++ ++sws+ +nsfvv++  ef++++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++          eF+++ F +g+k+ll++i 
  EcC031900.20  36 FLSKTYDMVDDPSTDAVVSWSRGNNSFVVWNVPEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------FEFANEGFLRGQKHLLKSIS 123
                   9*****************************************************************99.........67****************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r++ 
  EcC031900.20 124 RRRP 127
                   *975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-3928120IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.08E-3531125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.4E-6032125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-213659IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.7E-3136125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-217486IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407599IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-218799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007033Biological Processvacuole organization
GO:0009660Biological Processamyloplast organization
GO:0009959Biological Processnegative gravitropism
GO:0010118Biological Processstomatal movement
GO:0016192Biological Processvesicle-mediated transport
GO:0005634Cellular Componentnucleus
GO:0009705Cellular Componentplant-type vacuole membrane
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MEAVQDAASV VTTTTTTTPT ANGGGAAASA NSPPPFLSKT YDMVDDPSTD AVVSWSRGNN  60
SFVVWNVPEF SRDLLPKYFK HSNFSSFVRQ LNTYGFRKVD PDRFEFANEG FLRGQKHLLK  120
SISRRRPAHV QNNQQPPQAQ GSSVGACVEV GKFGLDEEVE RLKRDKNVLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-292312517129Heat shock factor protein 1
5d5v_B2e-292312517129Heat shock factor protein 1
5d5v_D2e-292312517129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368372.19e-87heat stress transcription factor A-1d
SwissprotQ84T616e-80HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A200PXG03e-86A0A200PXG0_9MAGN; Heat shock factor (HSF)-type
STRINGXP_009354811.12e-85(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-74heat shock transcription factor A1D
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]